2023

• Lebold KM, Cook M, Pincus AB, Nevonen KA, Davis BA, Carbone L, Calco GN, Pierce AB, Proskocil BJ, Fryer AD, Jacoby DB, Drake MG. Grandmaternal allergen sensitization reprograms epigenetic and airway responses to allergen in second generation offspring. Am J Physiol Lung Cell Mol Physiol. 2023 Oct 10. doi: 10.1152/ajplung.00103.2023. Epub ahead of print. PMID: 37814791.
• Escalona M, VanCampen J, Maurer NW, Haukness M, Okhovat M, Harris RS, Watwood A, Hartley GA, O'Neill RJ, Medvedev P, Makova KD, Vollmers C, Carbone L, Green RE. Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). J Hered. 2023 Mar 16;114(1):35-43. doi: 10.1093/jhered/esac043. PMID: 36146896; PMCID: PMC10019027.

2022

• Gutierrez J, Davis BA, Nevonen KA, Ward S, Carbone L, Maslen CL. DNA Methylation Analysis of Turner Syndrome BAV. Front Genet. 2022 May 31;13:872750. doi: 10.3389/fgene.2022.872750. PMID: 35711915; PMCID: PMC9194862.

2021

• Kundu P, Torres ERS, Stagaman K, Kasschau K, Okhovat M, Holden S, Ward S, Nevonen KA, Davis BA, Saito T, Saido TC, Carbone L, Sharpton TJ, Raber J. Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in App^NL-G-F, App^NL-F, and wild type mice. Sci Rep. 2021 Feb 25;11(1):4678. doi: 10.1038/s41598-021-83851-4. PubMed PMID: 33633159; PubMed Central PMCID: PMC7907263.

• Schenning KJ, Holden S, Davis BA, Mulford A, Nevonen KA, Quinn JF, Raber J, Carbone L, Alkayed NJ. Gene-Specific DNA Methylation Linked to Postoperative Cognitive Dysfunction in Apolipoprotein E3 and E4 Mice. J Alzheimers Dis. 2021;83(3):1251-1268. doi: 10.3233/JAD-210499. PMID: 34420963; PMCID: PMC8801332.

2020

• Leung KL, Sanchita S, Pham CT, Davis BA, Okhovat M, Ding X, Dumesic P, Grogan TR, Williams KJ, Morselli M, Ma F, Carbone L, Li X, Pellegrini M, Dumesic DA, Chazenbalk GD. Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming. Clin Epigenetics. 2020 Nov 23;12(1):181. doi: 10.1186/s13148-020-00970-x. PubMed PMID: 33228780; PubMed Central PMCID: PMC7686698.

• Hartley GA, Okhovat M, O'Neill RJ, Carbone L. Comparative Analyses of Gibbon Centromeres Reveal Dynamic Genus-Specific Shifts in Repeat Composition. Mol Biol Evol. 2021 Aug 23;38(9):3972-3992. doi: 10.1093/molbev/msab148. PMID: 33983366; PMCID: PMC8382927.

• Fei S, Harrington C, Minnier J, Carbone L, Searles R, Davis B, Ogle K, Planck S, Rosenbaum JT, Choi D. RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method. J Biomol Tech. 2020 Aug;31(Suppl):S7. PMCID: PMC7424691.

• Okhovat M, Nevonen KA, Davis BA, Michener P, Ward S, Milhaven M, Harshman L, Sohota A, Fernandes JD, Salama SR, O'Neill RJ, Ahituv N, Veeramah KR, Carbone L. Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19328-19338. doi: 10.1073/pnas.2006038117. Epub 2020 Jul 20. PMID: 32690705; PMCID: PMC7431028.
• Harris CJ, Davis BA, Zweig JA, Nevonen KA, Quinn JF, Carbone L, Gray NE. Age-Associated DNA Methylation Patterns Are Shared Between the Hippocampus and Peripheral Blood Cells. Front Genet. 2020 Mar 6;11:111. doi: 10.3389/fgene.2020.00111. PMID: 32211019; PMCID: PMC7067920.
• (Acknowledged) Taniguchi S, Elhance A, Van Duzer A, Kumar S, Leitenberger JJ, Oshimori N. Tumor-initiating cells establish an IL-33-TGF-β niche signaling loop to promote cancer progression. Science. 2020 Jul 17;369(6501):eaay1813. doi: 10.1126/science.aay1813. PMID: 32675345.

2019

• Carbone L, Davis BA, Fei SS, White A, Nevonen KA, Takahashi D, Vinson A, True C, Roberts CT Jr, Varlamov O. Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates. Sci Rep. 2019 Dec 17;9(1):19232. doi: 10.1038/s41598-019-55291-8. PMID: 31848372; PMCID: PMC6917716.
• Braun TP, Okhovat M, Coblentz C, Carratt SA, Foley A, Schonrock Z, Curtiss BM, Nevonen K, Davis B, Garcia B, LaTocha D, Weeder BR, Grzadkowski MR, Estabrook JC, Manning HG, Watanabe-Smith K, Jeng S, Smith JL, Leonti AR, Ries RE, McWeeney S, Di Genua C, Drissen R, Nerlov C, Meshinchi S, Carbone L, Druker BJ, Maxson JE. Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia. Nat Commun. 2019 Nov 29;10(1):5455. doi: 10.1038/s41467-019-13364-2. Erratum in: Nat Commun. 2022 Jun 16;13(1):3471. PMID: 31784538; PMCID: PMC6884457.

2018

• Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L. Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. Genome Res. 2018 Jul;28(7):983-997. doi: 10.1101/gr.233874.117. Epub 2018 Jun 18. PMID: 29914971; PMCID: PMC6028127.