Publications

• Detection of neoplastic-immune hybrid cells with metastatic properties in uveal melanoma

  Biomarker Research Dec 2024
  1. Ashley N. Anderson
  2. Patrick Conley
  3. Christopher D. Klocke
  4. Sidharth K. Sengupta
  5. Amara Pang
  6. Hannah C. Farley
  7. Abigail R. Gillingham
  8. Aubrey D. Dawson
  9. Yichen Fan
  10. Jocelyn A. Jones
  11. Summer L. Gibbs
  12. Alison H. Skalet
  13. Guanming Wu
  14. Melissa H. Wong

• Targeting CCL2/CCR2 Signaling Overcomes MEK Inhibitor Resistance in Acute Myeloid Leukemia

  Clinical Cancer Research May 15, 2024
  1. Rucha V. Modak
  2. Katia G. de Oliveira Rebola
  3. John McClatchy
  4. Mona Mohammadhosseini
  5. Alisa Damnernsawad
  6. Stephen E. Kurtz
  7. Christopher A. Eide
  8. Guanming Wu
  9. Ted Laderas
  10. Tamilla Nechiporuk
  11. Marina A. Gritsenko
  12. Joshua R. Hansen
  13. Chelsea Hutchinson
  14. Sara J.C. Gosline
  15. Paul Piehowski
  16. Daniel Bottomly
  17. Nicholas Short
  18. Karin Rodland
  19. Shannon K. McWeeney
  20. Jeffrey W. Tyner
  21. Anupriya Agarwal

• The landscape of cancer-rewired GPCR signaling axes

  Cell Genomics May 8, 2024
  1. Chakit Arora
  2. Marin Matic
  3. Luisa Bisceglia
  4. Pierluigi Di Chiaro
  5. Natalia De Oliveira Rosa
  6. Francesco Carli
  7. Lauren Clubb
  8. Lorenzo Amir Nemati Fard
  9. Giorgos Kargas
  10. Giuseppe R. Diaferia
  11. Ranka Vukotic
  12. Luana Licata
  13. Guanming Wu
  14. Gioacchino Natoli
  15. J. Silvio Gutkind
  16. Francesco Raimondi

• The Reactome Pathway Knowledgebase 2024

  Nucleic acids research Jan 5, 2024
  1. Marija Milacic
  2. Deidre Beavers
  3. Patrick Conley
  4. Chuqiao Gong
  5. Marc Gillespie
  6. Johannes Griss
  7. Robin Haw
  8. Bijay Jassal
  9. Lisa Matthews
  10. Bruce May
  11. Robert Petryszak
  12. Eliot Ragueneau
  13. Karen Rothfels
  14. Cristoffer Sevilla
  15. Veronica Shamovsky
  16. Ralf Stephan
  17. Krishna Tiwari
  18. Thawfeek Varusai
  19. Joel Weiser
  20. Adam Wright
  21. Guanming Wu
  22. Lincoln Stein
  23. Henning Hermjakob
  24. Peter D'Eustachio

• Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease

  Patterns Jul 14, 2023
  1. Joshua G. Burkhart
  2. Guanming Wu
  3. Xubo Song
  4. Francesco Raimondi
  5. Shannon McWeeney
  6. Melissa H. Wong
  7. Youping Deng

• Clonal hematopoiesis related TET2 loss-of-function impedes IL1β-mediated epigenetic reprogramming in hematopoietic stem and progenitor cells

  Nature communications Dec 2023
  1. J. McClatchy
  2. R. Strogantsev
  3. E. Wolfe
  4. H. Y. Lin
  5. M. Mohammadhosseini
  6. B. A. Davis
  7. C. Eden
  8. D. Goldman
  9. W. H. Fleming
  10. P. Conley
  11. G. Wu
  12. L. Cimmino
  13. H. Mohammed
  14. A. Agarwal

• Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

  Frontiers in immunology 2023
  1. Anna Niarakis
  2. Marek Ostaszewski
  3. Alexander Mazein
  4. Inna Kuperstein
  5. Martina Kutmon
  6. Marc E. Gillespie
  7. Akira Funahashi
  8. Marcio Luis Acencio
  9. Ahmed Hemedan
  10. Michael Aichem
  11. Karsten Klein
  12. Tobias Czauderna
  13. Felicia Burtscher
  14. Takahiro G. Yamada
  15. Yusuke Hiki
  16. Noriko F. Hiroi
  17. Finterly Hu
  18. Nhung Pham
  19. Friederike Ehrhart
  20. Egon L. Willighagen
  21. Alberto Valdeolivas
  22. Aurelien Dugourd
  23. Francesco Messina
  24. Marina Esteban-Medina
  25. Maria Peña-Chilet
  26. Kinza Rian
  27. Sylvain Soliman
  28. Sara Sadat Aghamiri
  29. Bhanwar Lal Puniya
  30. Aurélien Naldi
  31. Tomáš Helikar
  32. Vidisha Singh
  33. Marco Fariñas Fernández
  34. Viviam Bermudez
  35. Eirini Tsirvouli
  36. Arnau Montagud
  37. Vincent Noël
  38. Miguel Ponce-de-Leon
  39. Dieter Maier
  40. Angela Bauch
  41. Benjamin M. Gyori
  42. John A. Bachman
  43. Augustin Luna
  44. Janet Piñero
  45. Laura I. Furlong
  46. Irina Balaur
  47. Adrien Rougny
  48. Yohan Jarosz
  49. Rupert W. Overall
  50. Guanming Wu

• Illuminate the Functions of Dark Proteins Using the Reactome-IDG Web Portal

  Current Protocols Jul 2023
  1. Deidre Beavers
  2. Timothy Brunson
  3. Nasim Sanati
  4. Lisa Matthews
  5. Robin Haw
  6. Solomon Shorser
  7. Cristoffer Sevilla
  8. Guilherme Viteri
  9. Patrick Conley
  10. Karen Rothfels
  11. Henning Hermjakob
  12. Lincoln Stein
  13. Peter D'Eustachio
  14. Guanming Wu

• Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

  Database 2023
  1. Marija Orlic-Milacic
  2. Karen Rothfels
  3. Lisa Matthews
  4. Adam Wright
  5. Bijay Jassal
  6. Veronica Shamovsky
  7. Quang Trinh
  8. Marc E. Gillespie
  9. Cristoffer Sevilla
  10. Krishna Tiwari
  11. Eliot Ragueneau
  12. Chuqiao Gong
  13. Ralf Stephan
  14. Bruce May
  15. Robin Haw
  16. Joel Weiser
  17. Deidre Beavers
  18. Patrick Conley
  19. Henning Hermjakob
  20. Lincoln D. Stein
  21. Peter D’Eustachio
  22. Guanming Wu

• Using the Reactome Database

  Current Protocols Apr 2023
  1. Karen Rothfels
  2. Marija Milacic
  3. Lisa Matthews
  4. Robin Haw
  5. Cristoffer Sevilla
  6. Marc Gillespie
  7. Ralf Stephan
  8. Chuqiao Gong
  9. Eliot Ragueneau
  10. Bruce May
  11. Veronica Shamovsky
  12. Adam Wright
  13. Joel Weiser
  14. Deidre Beavers
  15. Patrick Conley
  16. Krishna Tiwari
  17. Bijay Jassal
  18. Johannes Griss
  19. Andrea Senff-Ribeiro
  20. Timothy Brunson
  21. Robert Petryszak
  22. Henning Hermjakob
  23. Peter D'Eustachio
  24. Guanming Wu
  25. Lincoln Stein

• VIGET

  Frontiers in immunology 2023
  1. Timothy Brunson
  2. Nasim Sanati
  3. Anthony Huffman
  4. Anna Maria Masci
  5. Jie Zheng
  6. Michael F. Cooke
  7. Patrick Conley
  8. Yongqun He
  9. Guanming Wu