Associate Professor | Graduate Program in Biomedical Sciences

“Giving cancer the flu” Strategies to manipulate the tumor immune microenvironment including antibodies targeting immune checkpoints have revolutionized cancer treatment. However, many tumors are immunologically ‘cold’ thereby escaping these immunotherapies. ‘Tricks and tips’ from viruses/bacteria or autoimmune disease have yielded many approaches to enhance immune recognition of tumors. We found that an RNA sensing pathway, Retinoic acid Induced Gene 1 (RIG-I) that serves as a receptor for viral RNA, can be adopted as a robust immune activator across cancer types A few questions we are investigating currently What cell types in the tumor benefit from RIG activation - the tumor cells or immune cells? What makes some tumors sensitive or resistant to RIG activation? Can we develop small molecule modulators of RIG-I function? Lab Website

Assistant Professor | Graduate Program in Biomedical Sciences

The Andres Lab specializes in cellular physiology of health and disease within the gastrointestinal tract, with a particular interest in cellularcommunication. Our work is centered on post-transcriptional regulation of intestinal physiology via the RNA binding protein IMP1 and the role ofextracellular vesicles (EVs) as carriers of information into and throughout the human body. Our projects examine roles for IMP1 and EVs in development,inflammation, and cancer. Lab Website

Assistant Professor | Graduate Program in Biomedical Sciences

T cells are the stars of your immune system, playing a central role in protecting you from viral and bacterial infections. It turns out T cells can similarly fight cancer, but it’s a harder fight, and they often don’t succeed in preventing cancer growth. The Burger lab is focused on understanding why T cells struggle to control cancer and finding ways to boost T cell function with cancer therapies. Specifically, we use genetically engineered mouse models of lung cancer to uncover factors regulating T cell responses and preclinically test therapeutic approaches that may benefit human patients. Lab Website

Associate Professor | Graduate Program in Biomedical Sciences

A major focus of the Cohen lab is on the evolutionarily conserved post-translational modification, ADP-ribosylation. ADP-ribosylation is catalyzed by afamily of enzymes known as PARPs (17 family members in humans) using NAD+ as a substrate. PARPs catalyze the transfer of ADP-ribosefrom NAD+ to amino acids in target proteins. We have developed enabling chemical tools and approaches to study PARPs and NAD+; theseinclude orthogonal, clickable NAD+ analogengineered enzyme pairs, selective PARP inhibitors, and NAD+ biosensors. These tools andapproaches have provided insights into the cellular function of PARPs and NAD+ in ways not attainable with conventional methods. Lab Website

Associate Professor | Neuroscience Graduate Program

The Emery lab seeks to uncover the molecular and cellular mechanisms controlling myelination in the CNS. In particular, we are interested in the genetic pathways that regulate the generation of oligodendrocytes and their subsequent myelination of axons. We also seek to understand how neurons and oligodendrocytes interact to ultimately determine which axons are myelinated. Finally, we aim to understand how loss of myelin impacts neuronal health and how to promote myelin repair in demyelinating disease (remyelination). Our lab uses a range of techniques including genetically modified mouse models, tissue culture, genome-wide sequencing and viral approaches to address these questions. Lab Website

Assistant Professor | Neuroscience Graduate Program

The Frank lab studies cannabinoid receptors and how they are activated by their endogenous lipid ligands to affect biomolecule secretion in thebrain and in the pancreas. The lab synthesizes and evaluates new small molecule-based light-activatable tools using chemistry, molecularbiology, imaging, whole-cell electrophysiology, and in vivo behavioral experiments. Lab Website

Professor | Neuroscience Graduate Program

Our group uses the fruit fly Drosophila as a model to explore fundamental aspects of glial cell biology and neuron-glia interactions. Glial cells constitute the majority of the cells in the human brain and play crucial roles in the assembly, function and maintenance of neural circuits. Despite their abundance, we know surprisingly little about how glia develop or function. The major advantages of the fly are its remarkable collection of molecular-genetic tools for the analysis of gene function, the depth of our understanding of the development, histology and function of the Drosophila nervous system. Lab Website

Associate Professor | Biomedical Engineering

My laboratory is focused on understanding the phenotypic and molecular responses of cancer and normal cells to diverse stimuli including small molecule inhibitors and growth factors. We use a variety of novel imaging-based and molecular techniques to assess dynamic changes in single cells, and have a particular interest in elucidating mechanisms of therapeutic response and resistance in cancer. We use well-integrated computational and experimental techniques with a key goal of closing the gap between these approaches. My experimental expertise is in the analysis of high-throughput profiling data, including next-generation sequencing, high-throughput functional assays, and imaging assays. Lab Website

Professor | Biomedical Engineering

The Hinds lab focuses on understanding and interceding in progression of cardiovascular diseases. Our team studies ways to engineer biomaterials to promote healing and the impact of fluid flow on vascular cells. The lab utilizes in vitro mechanistic studies with cultured cells and blood components, ex vivo experimentation with whole blood, and in vivo animal studies. Members of our lab have diverse academic backgrounds including engineering, biology, chemistry, medicine, and materials science. Our broad approach to understanding the cardiovascular system allows our team numerous opportunities to apply basic science and engineering principles to understand and treat cardiovascular diseases. Lab Website

Associate Professor | Clinical Psychology

The Science of Nutrition Affect and Cognition in Kids (SNACK) Lab studies complementary and integrative interventions (micronutrients [vitamins/minerals], mindfulness) for mental health concerns including ADHD, emotional dysregulation, mood, anxiety and stress. We are examining the biomarkers of micronutrient response, including the microbiome and its metabolites, neurotransmitter concentrations in urine and plasma, stress-related hormones and cytokines, and genetic factors. In 2024, we are starting a new NIH clinical trial in racially and ethnically diverse participants, with a focus on Black and Latino/a families in Portland, using micronutrients. We are particularly looking for individuals that identify as BIPOC and/or speak Spanish. The cross-disciplinary team (psychologist, nutritionist, naturopath, psychiatrist, and epidemiologist) works together to conduct quantitative and qualitative research. Lab Website

Professor | Clinical Psychology

The Loftis laboratory is focused on investigating the psychoneuroimmunological mechanisms contributing to substance use disorders, cognitive impairment, and mood disorders. We conduct preclinical studies using animal models and clinical studies to characterize the inflammatory pathways contributing to cognitive dysfunction, depression, and anxiety, particularly in individuals with a history of substance use disorders (e.g., methamphetamine, alcohol) and viral infection [e.g., hepatitis C virus (HCV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)]. A major goal of this translational work is to develop and test anti-inflammatory interventions that can treat impairments in neuropsychiatric function and improve recovery outcomes and quality of life. Lab Website

Assistant Professor | Graduate Program in Biomedical Sciences

Research in my laboratory focuses on two main areas: First, how mutations in the LRRK2 (leucine-rich repeat kinase 2) gene promote Parkinson’s disease neurodegeneration through altered LRRK2 kinase activity. Second, how gene-environment interactions act as a pivotal determinant of neurodegeneration following exposure to certain environmental neurotoxins such as pesticides. For each area, my laboratory utilizes a combination of in vitro biochemistry, Drosophila and rodent animal models and a wide array of molecular biology, imaging and behavioral approaches that we have acquired deep expertise in. Lab Website

Professor | Neuroscience Graduate Program

The Monk lab studies diverse non-neuronal cells in the nervous system called glia. Although historically understudied compared to neurons, glia are critical regulators of every major aspect of nervous system biology. Using zebrafish as a discovery platform coupled with synergistic approaches in mouse, our group is answering key questions in glial cell biology including: How do glia acquire the complex morphologies that enable their functions? What molecules are used for proper axon-glial, glial-glial, and glial-vasculature communication? How do glia use these mechanisms to control neural circuit function and ultimately animal behavior? Answers to these questions will help us better understand how the brain works and to lay the foundation for new therapeutic approaches in neurological disease. Lab Website

Assistant Professor | Biomedical Engineering

The overarching scientific mission of the Nakayama group is to develop therapeutic treatments for traumatic musculoskeletal injuries using regenerative bioengineering strategies. The three areas of focus that frame my research program are: 1) biomaterial and cell-based therapies to treat critically sized muscle and bone defects; 2) rehabilitation engineering to improve function following traumatic lower extremity injuries; 3) material-driven immunomodulation of the musculoskeletal regenerative niche. Specifically, our group modulates extracellular environments using biomaterials and rehabilitation exercise to stimulate regenerative programs in damaged tissues. Our recent efforts have focused on bridging the gap in the clinical management of complex musculoskeletal extremity trauma. Lab Website

Associate Professor | Program in Biomedical Sciences

Mucosal surfaces are constantly exposed to the environment and therefore represent a front-line in protection against viral infection. Similarly, mucosal surfaces are key sites of viral shedding and transmission. The intestine is the largest mucosal surface and must balance its role in nutrient uptake with its role as an immunological barrier. We study the biology of the intestinal cells and cytokines – how they promote health and resistance to infection. We use the mouse model of persistent norovirus infection and organoid cultures from subjects with intestinal disease to understand how immune pathways function and how they become dysfunctional in disease states. Lab Website

Associate Professor | Neuroscience Graduate Program

Defining the molecular mechanisms that underlie autism requires not only identification of critical genetic risk factors, but also understanding how they interact within a complex and developing system. I believe we need to shift our focus to a new paradigm that incorporates many different patient-specific mutations in a multitude of models with complementary strengths and weaknesses. Advances in genome editing, induced pluripotent stem cells (iPSCs), neurogenetics, and functional genomics have made this patient-specific approach feasible. Furthermore, focusing on mutations in genes that are master regulators of key biologic networks provides an avenue for reducing the phenotypic complexity of autism, biomarker discovery, and targeted personalized therapies that will have impact beyond a single risk gene. Lab Website

Assistant Professor | Graduate Program in Biomedical Sciences

Our immune system relies upon rapid and robust signaling responses to the detection of an invading pathogen. In these signaling pathways, information is relayed through post-translational modifications such as protein ubiquitination. Unfortunately for us, many pathogens have the remarkable ability to subvert host signaling responses and thus evade detection. Work in our lab focuses on the mechanisms by which pathogens manipulate the host ubiquitin signaling response. We use biochemical and structural biology techniques to understand the molecular details of these host-pathogen interactions, with the goal of learning more about the requirements for infection and immunity. Lab Website

Assistant Professor | Graduate Program in Biomedical Sciences

Rauch lab research aims to understand how mammalian barrier tissues such as the intestine or the reproductive tract distinguish between harmless and dangerous microorganisms, and what happens during infection of epithelial cells at these tissues. The reaction of an epithelial cell to pathogen assault represents the first decision of the ensuing immune reaction, and understanding these processes will help us to better treat infections and chronic inflammatory diseases. We use various mouse models of infection in our research. In addition, stem cell derived organoids from mice and humans allow us to model and study epithelial infections in a dish. Lab Website

Associate Professor | Behavioral and Systems Neuroscience

We conduct research related to hearing - auditory perception and cochlear implants. We focus on two areas: 1) how binaural integration differs in people with hearing loss and hearing devices like cochlear implants, and how these differences affect the ability to segregate (and understand) speech in background noise; 2) how pitch perception differs with cochlear implants, particularly the weighting of cochlear place versus temporal envelope cues.  We study these questions mainly in human subjects with normal hearing and hearing loss using psychophysics/behavior, non-invasive electrophysiological measures using the cochlear implant to record neural signals, and computational modeling. Lab Website

Professor | Biomedical Engineering

We study embryonic heart development and how abnormal blood flow conditions (due to environmental stressors) lead to congenital heart disease, which affects 1% of newborns. To this end, we use chicken embryo models because they are easy to access while developmental processes are conserved among vertebrate species. Chicken embryos, moreover, replicate heart defects in human newborns with congenital heart disease. For our studies, we use a combination of engineering and biological techniques, including development of computational models. Lab Website

Assistant Professor | Neuroscience Graduate Program

Our aims in research are to understand 1) how genetic variation influences the cellular organization of neural circuits and how 2) viruses interact with host brain cell types. Our approach is primarily focused on using single-cell, single-virion genomic to generate comprehensive and high-throughput datasets. Lab Website

Professor | Program in Biomedical Sciences

The Schedin lab investigates how normal reproductive biology defines windows of risk for breast cancer, with a focus on stromal-epithelial interactions. Our lab is at the forefront of investigations focused on understanding how the breast microenvironment changes with reproductive state, and have shown that mammary stroma is highly plastic, remodeling in response to various physiologic signals including pregnancy, lactation and weaning. We have found that the inherent plasticity of normal breast stroma contributes significantly to breast cancer risk and survival outcomes in young women, but also reveals new understanding for life-cycle specific breast cancer prevention and treatment strategies. Lab Website

Associate Professor | Clinical Psychology

The overarching research goal of the laboratory is to understand the influence of early environmental factors such as maternal nutrition, stress, and mental health during gestation on offspring neurobehavioral regulation. The primary focus is the identification of early environmental risk and protective factors for neurodevelopmental disorders including autism spectrum disorders (ASDs), attention deficit hyperactivity disorder (ADHD), anxiety, and depression in order to inform the design of prevention strategies and early interventions. One specific focus is the impact of exposure to maternal obesity and poor nutrition during the perinatal period on the behavior, and physiology of the developing offspring. Lab Website

Associate Professor | Neuroscience Graduate Program

My lab is interested in the protein alpha-synuclein, including its normal and pathologic functions related to diseases like Parkinson’s Disease(PD), Lewy Body Dementia (LBD), and the skin cancer melanoma. We use in vivo multiphoton imaging approaches to study the aggregation ofalpha-synuclein in mouse models of PD and LBD, and a variety of techniques to study the novel hypothesis, developed by our group, thatalpha-synuclein plays unexpected roles in the cell nucleus in DNA repair in neurons and melanoma cells. Lab Website

Professor | Neuroscience Graduate Program

Researchers in the Westbrook Lab would like to understand how synapses and small circuits do their work. Our earlier work was mostly directed at the level of receptors, particularly N-methyl-D-aspartate (NMDA) receptors, and the function of single synapses. Our efforts have now largely shifted to studies of small networks (microcircuits) in the hippocampus. Our goal is to understand how such circuits are formed, regulate their activity and contribute to the function of neural systems. Lab Website

Associate Professor | Clinical Psychology

The Advancing Research in Pediatric Pain Lab studies novel models of risk for pain in children and families, with the goal of identifying medical system and psychosocial targets for prevention of chronic pain problems. We assess pain via patient-reported outcomes, lab-based pain testing, and neuroimaging approaches. Our work focuses on family factors, intergenerational risk for pain, and pain and prescription opioid use in adolescents and young adults in the context of acute and chronic pain experiences. Lab Website

Professor | Behavioral and Systems Neuroscience

My lab studies the role of neuronal plasticity in drug addiction. Specifically, we use rat drug self-administration models to understand why persons recovering from substance use disorder remain vulnerable to drug craving and relapse even after long periods of abstinence. Cell culture models are sometimes used for mechanistic experiments to complement the in vivo studies. Techniques employed include biochemistry, electrophysiology, fiber photometry and DREADDs. Lab Website

Associate Professor | Neuroscience Graduate Program

Our lab is interested in how the nervous system is assembled, and how this process goes wrong in neurodevelopmental disorders. We use mouse genetic approaches to study neuronal specification, migration, axon guidance, and synaptogenesis. Current projects involve identifying the molecular pathways required for generating diverse subtypes of neurons with unique molecular, morphological, and physiological properties in the retina and dorsal root ganglia. We are also investigating how the transmembrane protein Dystroglycan regulates inhibitory synapse formation and maintenance in the brain of mouse models of dystroglycanopathy, a form of congenital muscular dystrophy that is accompanied by a range of neurological defects. Lab Website

Professor | Biomedical Engineering

How do molecular machines really work? And can we predict future cell behavior based on sparse information of the past? The Zuckerman group uses physics-based computations to study biological phenomena ranging from molecular to cell scale. At the molecular scale, we use principles of dynamical trajectories to design better methods applicable for drug design; yet the same ideas can be used to help understand the behaviors of cells, for instance in tumor environments. We also use statistical inference to determine mechanisms of molecular machines such as transporters in a quantitative manner. An overarching challenge of the modern era of data-intensive biology is the generation of understandable, mechanistic models based on experimental data, and we are actively working in this area using innovative methods. The group is funded both by NIH and NSF. Lab Website